This may be restricted by unchecking appropriate options as shown below (some of these may not yet be implemented). Keywords, sample annotations, Pubmed identifiers, etc. Querying the repository is as simple as entering a term in the Query field and hitting the query button.īy default, your term will be searched among all possible fields, e.g., experiment names, repository identifiers, Some additional items in the menu may be shown depending on your access level. If you are logged in, the Public View (as shown to anonymous users) is always accessible via the Public View link in your menu. If you do log in, a more complex menu (shown below) will offer you a variety of options to browse, submit, annotate and even analyze data online. Link is offered in the right corner if you are not logged in. Public view of FlowRepository can be accessed by navigating to the landing page.įrom there, you may choose to login/register or to continue using FlowRepository anonymously. Finally, once the manuscript is accepted, the experiment with all its data and annotations will become publicly available. This will get reviewers a read-only access to the experiment. Once the experiment is ready, researchers will typically be also submitting a manuscript to a pier-review journal.Īt that point, they should generate an anonymous access key (64 character string) and share it with the reviewers (e.g., placing it in the cover letter). The private period is limited to one year. Data Organization and Availabilityĭata in FlowRepository is organized based on so calledĮxperiments in FlowRepository typically undergo through several stages.įirst, they are private or shared among a group of specified researchers, who upload all related data and provide annotations as required by MIFlowCyt. However by default, you will be directed to our new upload and download pages that do not require Java any more.įinally, while anonymous read-only access is supported, we encourage users to register in order to gain full access to the FlowRepository. Java is also required for data upload and download if you select the Java-based uploader or downloader. Windows users can get the latest Java from a Java Download Page,Īnd Linux users should preferably obtain Java and the Firefox Java plugin directly from their distribution. If needed, Mac users should use the apple software update feature to install Java, In order to create analyze data online, your browser should be able to run Java version 1.5.1 or higher.Īn Online Java Tester directly from your web browser. Not be able to access all functionality or the web site may not appear as nice. Or even other systems, such as iOS or Androind phones and tables, however, you may You may be able to run FlowRepository using some other major web browsers, such as Apple Safari, Google Chrome, Internet Explorer In the circle on in top right corner of most blue boxes, which will invoke an additional information window.įlowRepository has a few requirements for the computer operating system and web browser you use.Ĭurrently, you can use Windows (XP, Vista, Windows 7, Windows 8), Mac OS X (10.3 or above), or Linux (Ubuntu, OpenSUSE, Fedora, Red Hat).Īs for your web browser, we recommend the latest version of Firefox. This Quick Start Guide describes the most common use cases of working with this repository.īoxes that are placed on various pages within the repository application to provide contextual information and guide users working with the repository. It is primarily used as a data deposition place for experimental findings published in pier-reviewedįlowRepository is funded by the International Society for Advancement of Cytometry (ISAC)Īnd powered by the Cytobank engine specifically extended for the purposes of this repository. Of flow cytometry experiments where users can query and download data collected and annotated Please use the navigation bar at left to explore, and note that pressing the question mark button in any window in the FlowJo application will launch a web browser and access a help page relevant to that window.Īs a note, we are pleased to be able to frequently update FlowJo to provide new features and analysis capabilities.FlowRepository - Quick Start Guide Introduction AboutįlowRepository is a web-based application accessible from a web browser that serves as an online database Our web manual is a search-able set of pages which explains the many features and functions in FlowJo. The workspace is saved as a FlowJo document on your hard disk when you reopen the document, you will see your analysis as it was when it was last saved. The environment is presented as the Workspace, which contains a list of loaded samples (experimental data), statistics, gates, and other analyses, as well as tabular and graphical layouts. Welcome to FlowJo, a software application with an integrated environment for viewing and analyzing flow cytometric data.
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